| Sat 07 Aug | Yeovil Town | Away | League | 1-2 | Revell | 4126 |
| Tue 10 Aug | Swindon Town | Away | LC r1 | 2-1 | Jarvis, Revell | 4450 |
| Fri 13 Aug | Charlton Athletic | Home | League | 1-3 | McGleish | 5535 |
| Sat 21 Aug | Southampton | Away | League | 1-1 | Forbes | 21468 |
| Tue 24 Aug | West Bromwich Albion | Home | LC r2 | 0-2 | | 2349 |
| Sat 28 Aug | Exeter City | Home | League | 3-0 | Revell, McGleish, Cox | 4145 |
| Wed 01 Sep | Brighton & Hove Albion | Away | JPT s.r1 | 1-0 | Cox | 3124 |
| Sat 04 Sep | Dagenham & Redbridge | Away | League | 0-2 | | 4195 |
| Sat 11 Sep | Huddersfield Town | Home | League | 1-2 | Cox | 3918 |
| Sat 18 Sep | Notts County | Away | League | 2-3 | Jarvis, Spring | 6256 |
| Fri 24 Sep | Brentford | Home | League | 1-0 | McGleish | 4485 |
| Tue 28 Sep | Walsall | Home | League | 0-0 | | 2963 |
| Sat 02 Oct | Oldham Athletic | Away | League | 1-1 | McGleish | 3806 |
| Tue 05 Oct | Brentford | Home | JPT s.r2 | 0-0 | | 1152 |
| Sat 09 Oct | Sheffield Wednesday | Away | League | 0-1 | | 17445 |
| Sat 16 Oct | Hartlepool United | Home | League | 1-0 | Tehoue | 3605 |
| Sat 23 Oct | Swindon Town | Away | League | 2-2 | Spring, Revell | 8384 |
| Sat 30 Oct | Rochdale | Home | League | 2-1 | Chorley (pen), Cox | 4880 |
| Tue 02 Nov | Colchester United | Away | League | 2-3 | Revell (2) | 3899 |
| Sat 06 Nov | Dagenham & Redbridge | Away | FAC r1 | 1-1 | Revell | 3378 |
| Sat 13 Nov | Bristol Rovers | Away | League | 3-0 | Cox, Revell (2) | 5541 |
| Tue 16 Nov | Dagenham & Redbridge | Home | FAC r1r | 3-2 | McGleish (2), Revell | 2901 |
| Sat 20 Nov | AFC Bournemouth | Home | League | 2-2 | Tehoue (2) | 4531 |
| Tue 23 Nov | Peterborough United | Away | League | 2-2 | Revell, Smith | 4423 |
| Mon 29 Nov | Droylsden | Away | FAC r2 | 1-1 | McGleish | 1762 |
| Tue 07 Dec | Droylsden | Home | FAC r2r | 8-2 | Chorley (pen), Tehoue (3), M'Poku, McGleish (3) | 1345 |
| Sat 11 Dec | Tranmere Rovers | Away | League | 2-1 | Dawson, McGleish | 4291 |
| Sat 01 Jan | Brighton & Hove Albion | Away | League | 0-5 | | 7198 |
| Mon 03 Jan | Colchester United | Home | League | 4-2 | Smith, Revell, M'Poku, Tehoue | 4339 |
| Sat 08 Jan | Norwich City | Away | FAC r3 | 1-0 | Smith | 18087 |
| Sat 15 Jan | Rochdale | Away | League | 1-1 | Chorley | 2731 |
| Sat 22 Jan | Sheffield Wednesday | Home | League | 4-0 | Chorley (pen), Kane, Revell, McGleish | 6449 |
| Tue 25 Jan | Milton Keynes Dons | Home | League | 2-2 | McGleish, Forbes | 3131 |
| Sat 29 Jan | Swansea City | Away | FAC r4 | 2-1 | Smith, Tate (og) | 6281 |
| Tue 01 Feb | Brighton & Hove Albion | Home | League | 0-0 | | 5872 |
| Sat 05 Feb | AFC Bournemouth | Away | League | 1-1 | Cox | 6717 |
| Tue 08 Feb | Swindon Town | Home | League | 3-0 | Cox, Revell, Dawson | 4214 |
| Sat 12 Feb | Bristol Rovers | Home | League | 4-1 | Smith, Whing, Kane (2) | 4913 |
| Tue 15 Feb | Milton Keynes Dons | Away | League | 3-2 | Smith (2), Tehoue | 6469 |
| Sun 20 Feb | Arsenal | Home | FAC r5 | 1-1 | Tehoue | 9136 |
| Sat 26 Feb | Huddersfield Town | Away | League | 2-2 | Kane, Smith | 13527 |
| Wed 02 Mar | Arsenal | Away | FAC r5r | 0-5 | | 59361 |
| Sat 05 Mar | Notts County | Home | League | 2-0 | Cox, Whing | 4238 |
| Tue 08 Mar | Walsall | Away | League | 2-0 | Kane, Tehoue | 3019 |
| Sat 12 Mar | Oldham Athletic | Home | League | 1-0 | M'Poku | 4349 |
| Tue 15 Mar | Hartlepool United | Away | League | 1-0 | Smith | 2313 |
| Sat 19 Mar | Brentford | Away | League | 1-2 | McGleish | 6368 |
| Tue 22 Mar | Dagenham & Redbridge | Home | League | 1-1 | McGleish (pen) | 4581 |
| Sat 26 Mar | Yeovil Town | Home | League | 1-5 | Cox | 4258 |
| Sat 02 Apr | Charlton Athletic | Away | League | 1-3 | McGleish | 15875 |
| Tue 05 Apr | Plymouth Argyle | Home | League | 2-0 | McGleish, Cox | 3255 |
| Sat 09 Apr | Southampton | Home | League | 0-2 | | 7714 |
| Tue 12 Apr | Carlisle United | Home | League | 0-0 | | 3228 |
| Sat 16 Apr | Exeter City | Away | League | 1-2 | Cox | 5036 |
| Fri 22 Apr | Peterborough United | Home | League | 2-1 | Zakuani (og), Jarvis | 5476 |
| Mon 25 Apr | Carlisle United | Away | League | 1-0 | Tehoue | 4685 |
| Sat 30 Apr | Tranmere Rovers | Home | League | 0-3 | | 5302 |
| Sat 07 May | Plymouth Argyle | Away | League | 4-1 | McGleish (pen), Cox, Revell (2) | 11501 |
