| Sat 05 Sep | Forest Green Rovers | Away | LC r1 | 2-1 | Johnson, Wilkinson | |
| Tue 08 Sep | Brighton & Hove Albion u21s | Home | FLT Group | 3-2 | Ling, Johnson, Wilkinson | |
| Sat 12 Sep | Oldham Athletic | Away | League | 1-0 | Johnson | |
| Tue 15 Sep | Plymouth Argyle | Home | LC r2 | 3-2 | Dennis. McAnuff, Johnson | |
| Sat 19 Sep | Mansfield Town | Home | League | 2-2 | Johnson, Sotiriou | |
| Sat 03 Oct | Cheltenham Town | Home | League | 0-2 | | |
| Tue 06 Oct | AFC Wimbledon | Home | FLT Group | 2-0 | Angol (pen), Wilkinson | |
| Sat 10 Oct | Barrow | Away | League | 1-1 | Johnson | |
| Tue 13 Oct | Walsall | Away | League | 1-2 | Johnson | |
| Sat 17 Oct | Grimsby Town | Home | League | 2-3 | Wilkinson, Maguire-Drew | |
| Tue 20 Oct | Tranmere Rovers | Away | League | 1-0 | Johnson | |
| Sat 24 Oct | Stevenage | Away | League | 2-0 | Maguire-Drew, Wilkinson | |
| Tue 27 Oct | Exeter City | Home | League | 1-1 | Wilkinson | |
| Sat 31 Oct | Bolton Wanderers | Home | League | 4-0 | Johnson, McAnuff, Wilkinson, Clay | |
| Tue 03 Nov | Forest Green Rovers | Away | League | 1-2 | Wright | |
| Sat 07 Nov | Newport County | Home | FAC r1 | 1-2 | Kyprianou | |
| Tue 10 Nov | Charlton Athletic | Away | FLT Group | 1-3 | Dennis | |
| Sat 14 Nov | Colchester United | Away | League | 1-2 | Wilkinson | |
| Sat 21 Nov | Harrogate Town | Home | League | 3-0 | Johnson (3) | |
| Tue 24 Nov | Bradford City | Home | League | 1-0 | Happe | |
| Sat 28 Nov | Port Vale | Away | League | 3-2 | Johnson, Wilkinson, Brophy | |
| Sat 05 Dec | Scunthorpe United | Away | League | 0-2 | | |
| Tue 08 Dec | Bristol Rovers | Home | FLT r1 | 1-2 | Ling | 546 |
| Sat 12 Dec | Newport County | Home | League | 2-1 | Johnson, Brophy | 1746 |
| Tue 15 Dec | Morecambe | Away | League | 1-2 | Johnson | |
| Sat 19 Dec | Crawley Town | Home | League | 1-2 | Dallison (og) | |
| Sat 26 Dec | Cambridge United | Away | League | 1-2 | Johnson | |
| Tue 29 Dec | Southend United | Home | League | 2-0 | McAnuff, Wilkinson | |
| Sat 02 Jan | Salford City | Home | League | 1-0 | Johnson | |
| Sat 16 Jan | Morecambe | Home | League | 2-0 | Knight-Percival (og), Angol | |
| Sat 23 Jan | Forest Green Rovers | Home | League | 0-1 | | |
| Sat 30 Jan | Bolton Wanderers | Away | League | 0-2 | | |
| Tue 02 Feb | Crawley Town | Away | League | 0-0 | | |
| Sat 06 Feb | Colchester United | Home | League | 0-0 | | |
| Sat 20 Feb | Port Vale | Home | League | 1-1 | Kemp | |
| Tue 23 Feb | Bradford City | Away | League | 0-1 | | |
| Sat 27 Feb | Tranmere Rovers | Home | League | 1-3 | Turley | |
| Tue 02 Mar | Grimsby Town | Away | League | 1-0 | Happe | |
| Sat 06 Mar | Exeter City | Away | League | 0-4 | | |
| Tue 09 Mar | Stevenage | Home | League | 0-0 | | |
| Sat 13 Mar | Scunthorpe United | Home | League | 1-1 | Cissé | |
| Sat 20 Mar | Newport County | Away | League | 1-0 | Wilkinson | |
| Tue 23 Mar | Carlisle United | Away | League | 1-0 | Wilkinson | |
| Sat 27 Mar | Oldham Athletic | Home | League | 2-1 | Wilkinson, Kemp | |
| Fri 02 Apr | Mansfield Town | Away | League | 2-0 | Johnson (2) | |
| Mon 05 Apr | Walsall | Home | League | 0-0 | | |
| Sat 10 Apr | Cheltenham Town | Away | League | 0-1 | | |
| Tue 13 Apr | Harrogate Town | Away | League | 2-2 | Wilkinson, Johnson | |
| Sat 17 Apr | Barrow | Home | League | 2-0 | Happe, Kemp | |
| Tue 20 Apr | Cambridge United | Home | League | 2-4 | Kemp, Drysdale (og) | |
| Sat 24 Apr | Southend United | Away | League | 1-2 | Dennis | |
| Sat 01 May | Carlisle United | Home | League | 2-3 | Wilkinson, Kemp | |
| Sat 08 May | Salford City | Away | League | 0-3 | | |
